Ben Langmead

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Citations	108428	73640
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Steven SalzbergBloomberg Distinguished Professor, Johns Hopkins UniversityVerified email at jhu.edu
Jeff LeekChief Data Officer, VP, and J Orin Edson Foundation Professor, Fred Hutchinson Cancer CenterVerified email at fredhutch.org
Kasper D. HansenDepartment of Biostatistics, Johns Hopkins UniversityVerified email at jhsph.edu
Mihai PopProfessor of Computer Science, University of Maryland, College ParkVerified email at umd.edu
Cole TrapnellAssociate Professor, Dept. of Genome Sciences, University of WashingtonVerified email at uw.edu
Andrew E. JaffeVP, Head of Data Sciences, Neumora TherapeuticsVerified email at neumoratx.com
Christopher WilksPhD Student in Computer Science, Johns Hopkins UniversityVerified email at jhu.edu
Rafael A IrizarryProfessor, Biostatistics and Computational Biology, Dana-Farber and HarvardVerified email at ds.dfci.harvard.edu
Daehwan KimUniversity of Texas Southwestern Medical CenterVerified email at UTSouthwestern.edu
Leonardo Collado-TorresInvestigator at LIBD + Asst. Prof., Department of Biostatistics, JHBSPHVerified email at libd.org
Michael C. SchatzBloomberg Distinguished Professor, Johns Hopkins UniversityVerified email at cs.jhu.edu
Travis GagieAssociate Professor at Dalhousie UniversityVerified email at dal.ca
Andrew P. FeinbergDirector, Center for Epigenetics; Bloomberg Distinguished Professor, Johns Hopkins UniversityVerified email at jhu.edu
Derrick WoodVeridian InformaticsVerified email at cs.jhu.edu
Christina BoucherUniversity of FloridaVerified email at ufl.edu
Jennifer Lu, Ph. D.Staff Scientist, Johns Hopkins UniversityVerified email at jhmi.edu
Hector Corrada BravoAssociate Professor of Computer Science, University of MarylandVerified email at umiacs.umd.edu
Sarven SabunciyanJohns Hopkins UniversityVerified email at jhmi.edu
Massimiliano RossiIlluminaVerified email at illumina.com
Geo PerteaData/Software Engineer, Lieber Institute for Brain DevelopmentVerified email at jhu.edu

Ben Langmead

Associate Professor of Computer Science, Johns Hopkins University

Verified email at cs.jhu.edu - Homepage

Sequence Alignment Computational Genomics Computer Science


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Fast gapped-read alignment with Bowtie 2 B Langmead, SL Salzberg Nature methods 9 (4), 357-359, 2012	49210	2012
Ultrafast and memory-efficient alignment of short DNA sequences to the human genome B Langmead, C Trapnell, M Pop, SL Salzberg Genome biology 10, 1-10, 2009	23924	2009
HISAT: a fast spliced aligner with low memory requirements D Kim, B Langmead, SL Salzberg Nature methods 12 (4), 357-360, 2015	18029	2015
Improved metagenomic analysis with Kraken 2 DE Wood, J Lu, B Langmead Genome biology 20, 1-13, 2019	4150	2019
Tackling the widespread and critical impact of batch effects in high-throughput data JT Leek, RB Scharpf, HC Bravo, D Simcha, B Langmead, WE Johnson, ... Nature Reviews Genetics 11 (10), 733-739, 2010	2168	2010
Aligning short sequencing reads with Bowtie B Langmead Current protocols in bioinformatics 32 (1), 11.7. 1-11.7. 14, 2010	1433	2010
Increased methylation variation in epigenetic domains across cancer types KD Hansen, W Timp, HC Bravo, S Sabunciyan, B Langmead, ... Nature genetics 43 (8), 768-775, 2011	1233	2011
Ballgown bridges the gap between transcriptome assembly and expression analysis AC Frazee, G Pertea, AE Jaffe, B Langmead, SL Salzberg, JT Leek Nature biotechnology 33 (3), 243-246, 2015	786	2015
BSmooth: from whole genome bisulfite sequencing reads to differentially methylated regions KD Hansen, B Langmead, RA Irizarry Genome biology 13, 1-10, 2012	784	2012
Searching for SNPs with cloud computing B Langmead, MC Schatz, J Lin, M Pop, SL Salzberg Genome biology 10, 1-10, 2009	661	2009
Scaling read aligners to hundreds of threads on general-purpose processors B Langmead, C Wilks, V Antonescu, R Charles Bioinformatics 35 (3), 421-432, 2019	635	2019
Cloud-scale RNA-sequencing differential expression analysis with Myrna B Langmead, KD Hansen, JT Leek Genome biology 11, 1-11, 2010	435	2010
Reproducible RNA-seq analysis using recount2 L Collado-Torres, A Nellore, K Kammers, SE Ellis, MA Taub, KD Hansen, ... Nature biotechnology 35 (4), 319-321, 2017	412	2017
Cloud computing and the DNA data race MC Schatz, B Langmead, SL Salzberg Nature biotechnology 28 (7), 691-693, 2010	383	2010
Reversible switching between epigenetic states in honeybee behavioral subcastes BR Herb, F Wolschin, KD Hansen, MJ Aryee, B Langmead, R Irizarry, ... Nature neuroscience 15 (10), 1371-1373, 2012	363	2012
Computational pan-genomics: status, promises and challenges Briefings in bioinformatics 19 (1), 118-135, 2018	345	2018
Polyester: simulating RNA-seq datasets with differential transcript expression AC Frazee, AE Jaffe, B Langmead, JT Leek Bioinformatics 31 (17), 2778-2784, 2015	309	2015
Cloud computing for genomic data analysis and collaboration B Langmead, A Nellore Nature Reviews Genetics 19 (4), 208-219, 2018	307	2018
Lighter: fast and memory-efficient sequencing error correction without counting L Song, L Florea, B Langmead Genome biology 15, 1-13, 2014	293	2014
Metagenome analysis using the Kraken software suite J Lu, N Rincon, DE Wood, FP Breitwieser, C Pockrandt, B Langmead, ... Nature protocols 17 (12), 2815-2839, 2022	252	2022

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