Jose M Muino
Cited by
Cited by
Orchestration of floral initiation by APETALA1
K Kaufmann, F Wellmer, JM Muiño, T Ferrier, SE Wuest, V Kumar, ...
science 328 (5974), 85-89, 2010
Characterization of MADS-domain transcription factor complexes in Arabidopsis flower development
C Smaczniak, RGH Immink, JM Muiño, R Blanvillain, M Busscher, ...
Proceedings of the National Academy of Sciences 109 (5), 1560-1565, 2012
Target Genes of the MADS Transcription Factor SEPALLATA3: Integration of Developmental and Hormonal Pathways in the Arabidopsis Flower
K Kaufmann, JM Muino, R Jauregui, CA Airoldi, C Smaczniak, ...
PLoS biology 7 (4), e1000090, 2009
Chromatin immunoprecipitation (ChIP) of plant transcription factors followed by sequencing (ChIP-SEQ) or hybridization to whole genome arrays (ChIP-CHIP)
K Kaufmann, JM Muino, M Østerås, L Farinelli, P Krajewski, GC Angenent
Nature protocols 5 (3), 457-472, 2010
Arabidopsis class I and class II TCP transcription factors regulate jasmonic acid metabolism and leaf development antagonistically
S Danisman, F Van der Wal, S Dhondt, R Waites, S de Folter, A Bimbo, ...
Plant physiology 159 (4), 1511-1523, 2012
Dynamics of chromatin accessibility and gene regulation by MADS-domain transcription factors in flower development
A Pajoro, P Madrigal, JM Muiño, JT Matus, J Jin, MA Mecchia, ...
Genome biology 15, 1-19, 2014
The BABY BOOM transcription factor activates the LEC1-ABI3-FUS3-LEC2 network to induce somatic embryogenesis
A Horstman, M Li, I Heidmann, M Weemen, B Chen, JM Muino, ...
Plant physiology 175 (2), 848-857, 2017
The histone deacetylase inhibitor trichostatin a promotes totipotency in the male gametophyte
H Li, M Soriano, J Cordewener, JM Muiño, T Riksen, H Fukuoka, ...
The Plant Cell 26 (1), 195-209, 2014
Balancing of histone H3K4 methylation states by the Kdm5c/SMCX histone demethylase modulates promoter and enhancer function
NS Outchkourov, JM Muino, K Kaufmann, WFJ van IJcken, ...
Cell reports 3 (4), 1071-1079, 2013
Arabidopsis JAGGED links floral organ patterning to tissue growth by repressing Kip-related cell cycle inhibitors
K Schiessl, JM Muiño, R Sablowski
Proceedings of the National Academy of Sciences 111 (7), 2830-2835, 2014
FRUITFULL controls SAUR10 expression and regulates Arabidopsis growth and architecture
M Bemer, H van Mourik, JM Muiño, C Ferrándiz, K Kaufmann, ...
Journal of experimental botany 68 (13), 3391-3403, 2017
ChIP-seq Analysis in R (CSAR): An R package for the statistical detection of protein-bound genomic regions
JM Muiño, K Kaufmann, RCHJ van Ham, GC Angenent, P Krajewski
Plant methods 7, 1-8, 2011
AIL and HDG proteins act antagonistically to control cell proliferation
A Horstman, H Fukuoka, JM Muino, L Nitsch, C Guo, P Passarinho, ...
Development 142 (3), 454-464, 2015
Linking aberrant chromatin features in chronic lymphocytic leukemia to transcription factor networks
JP Mallm, M Iskar, N Ishaque, LC Klett, SJ Kugler, JM Muino, VB Teif, ...
Molecular systems biology 15 (5), e8339, 2019
Structural determinants of DNA recognition by plant MADS-domain transcription factors
JM Muino, C Smaczniak, GC Angenent, K Kaufmann, ADJ van Dijk
Nucleic acids research 42 (4), 2138-2146, 2014
Differences in DNA binding specificity of floral homeotic protein complexes predict organ-specific target genes
C Smaczniak, JM Muiño, D Chen, GC Angenent, K Kaufmann
The Plant Cell 29 (8), 1822-1835, 2017
Long ncRNA A-ROD activates its target gene DKK1 at its release from chromatin
E Ntini, A Louloupi, J Liz, JM Muino, A Marsico, UAV Ørom
Nature communications 9 (1), 1636, 2018
Evolution of DNA-binding sites of a floral master regulatory transcription factor
JM Muiño, S de Bruijn, A Pajoro, K Geuten, M Vingron, GC Angenent, ...
Molecular Biology and Evolution 33 (1), 185-200, 2016
A 3D gene expression atlas of the floral meristem based on spatial reconstruction of single nucleus RNA sequencing data
M Neumann, X Xu, C Smaczniak, J Schumacher, W Yan, N Blüthgen, ...
Nature Communications 13 (1), 2838, 2022
Profiling nucleosome occupancy by MNase-seq: experimental protocol and computational analysis
A Pajoro, JM Muiño, GC Angenent, K Kaufmann
Plant chromatin dynamics: methods and protocols, 167-181, 2018
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