Sagar Khare
Sagar Khare
Assistant Professor of Chemistry and Chemical Biology, Rutgers University
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Zitiert von
Zitiert von
Quantitative reactivity profiling predicts functional cysteines in proteomes
E Weerapana, C Wang, GM Simon, F Richter, S Khare, MBD Dillon, ...
Nature 468 (7325), 790-795, 2010
RosettaScripts: a scripting language interface to the Rosetta macromolecular modeling suite
SJ Fleishman, A Leaver-Fay, JE Corn, EM Strauch, SD Khare, N Koga, ...
PloS one 6 (6), e20161, 2011
Macromolecular modeling and design in Rosetta: recent methods and frameworks
JK Leman, BD Weitzner, SM Lewis, J Adolf-Bryfogle, N Alam, RF Alford, ...
Nature methods 17 (7), 665-680, 2020
Computational design of ligand-binding proteins with high affinity and selectivity
CE Tinberg, SD Khare, J Dou, L Doyle, JW Nelson, A Schena, ...
Nature 501 (7466), 212-216, 2013
De novo enzyme design using Rosetta3
F Richter, A Leaver-Fay, SD Khare, S Bjelic, D Baker
PloS one 6 (5), e19230, 2011
Structure prediction for CASP7 targets using extensive all‐atom refinement with Rosetta@ home
R Das, B Qian, S Raman, R Vernon, J Thompson, P Bradley, S Khare, ...
Proteins: Structure, Function, and Bioinformatics 69 (S8), 118-128, 2007
Molecular dynamics simulation of amyloid β dimer formation
B Urbanc, L Cruz, F Ding, D Sammond, S Khare, SV Buldyrev, HE Stanley, ...
Biophysical journal 87 (4), 2310-2321, 2004
Computational redesign of a mononuclear zinc metalloenzyme for organophosphate hydrolysis
SD Khare, Y Kipnis, PJ Greisen, R Takeuchi, Y Ashani, M Goldsmith, ...
Nature chemical biology 8 (3), 294-300, 2012
Computational design of catalytic dyads and oxyanion holes for ester hydrolysis
F Richter, R Blomberg, SD Khare, G Kiss, AP Kuzin, AJT Smith, J Gallaher, ...
Journal of the American Chemical Society 134 (39), 16197-16206, 2012
The rate and equilibrium constants for a multistep reaction sequence for the aggregation of superoxide dismutase in amyotrophic lateral sclerosis
SD Khare, M Caplow, NV Dokholyan
Proceedings of the National Academy of Sciences 101 (42), 15094-15099, 2004
FireProt: energy-and evolution-based computational design of thermostable multiple-point mutants
D Bednar, K Beerens, E Sebestova, J Bendl, S Khare, R Chaloupkova, ...
PLoS computational biology 11 (11), e1004556, 2015
Computational design of an unnatural amino acid dependent metalloprotein with atomic level accuracy
JH Mills, SD Khare, JM Bolduc, F Forouhar, VK Mulligan, S Lew, ...
Journal of the American Chemical Society 135 (36), 13393-13399, 2013
Molecular origin of polyglutamine aggregation in neurodegenerative diseases
SD Khare, F Ding, KN Gwanmesia, NV Dokholyan
PLoS computational biology 1 (3), e30, 2005
Engineering V-type nerve agents detoxifying enzymes using computationally focused libraries
I Cherny, P Greisen Jr, Y Ashani, SD Khare, G Oberdorfer, H Leader, ...
ACS chemical biology 8 (11), 2394-2403, 2013
Common dynamical signatures of familial amyotrophic lateral sclerosis-associated structurally diverse Cu, Zn superoxide dismutase mutants
SD Khare, NV Dokholyan
Proceedings of the National Academy of Sciences 103 (9), 3147-3152, 2006
Can contact potentials reliably predict stability of proteins?
J Khatun, SD Khare, NV Dokholyan
Journal of molecular biology 336 (5), 1223-1238, 2004
Structures of the peptide-modifying radical SAM enzyme SuiB elucidate the basis of substrate recognition
KM Davis, KR Schramma, WA Hansen, JP Bacik, SD Khare, ...
Proceedings of the National Academy of Sciences 114 (39), 10420-10425, 2017
New insights into FAK signaling and localization based on detection of a FAT domain folding intermediate
RDS Dixon, Y Chen, F Ding, SD Khare, KC Prutzman, MD Schaller, ...
Structure 12 (12), 2161-2171, 2004
Folding of Cu, Zn superoxide dismutase and familial amyotrophic lateral sclerosis
SD Khare, F Ding, NV Dokholyan
Journal of molecular biology 334 (3), 515-525, 2003
FALS mutations in Cu, Zn superoxide dismutase destabilize the dimer and increase dimer dissociation propensity: a large-scale thermodynamic analysis
SD Khare, M Caplow, NV Dokholyan
Amyloid 13 (4), 226-235, 2006
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