| An atlas of human glycosylation pathways enables display of the human glycome by gene engineered cells Y Narimatsu, HJ Joshi, R Nason, J Van Coillie, R Karlsson, L Sun, Z Ye, ... Molecular cell 75 (2), 394-407. e5, 2019 | 222 | 2019 |
| Glyco-DIA: a method for quantitative O-glycoproteomics with in silico-boosted glycopeptide libraries Z Ye, Y Mao, H Clausen, SY Vakhrushev Nature methods 16 (9), 902-910, 2019 | 93 | 2019 |
| Display of the human mucinome with defined O-glycans by gene engineered cells R Nason, C Büll, A Konstantinidi, L Sun, Z Ye, A Halim, W Du, ... Nature communications 12 (1), 4070, 2021 | 88 | 2021 |
| Site-specific O-glycosylation of members of the low-density lipoprotein receptor superfamily enhances ligand interactions S Wang, Y Mao, Y Narimatsu, Z Ye, W Tian, CK Goth, E Lira-Navarrete, ... Journal of Biological Chemistry 293 (19), 7408-7422, 2018 | 71 | 2018 |
| The glycosylation design space for recombinant lysosomal replacement enzymes produced in CHO cells W Tian, Z Ye, S Wang, MA Schulz, J Van Coillie, L Sun, YH Chen, ... Nature communications 10 (1), 1785, 2019 | 62 | 2019 |
| An atlas of O-linked glycosylation on peptide hormones reveals diverse biological roles TD Madsen, LH Hansen, J Hintze, Z Ye, S Jebari, DB Andersen, HJ Joshi, ... Nature Communications 11 (1), 4033, 2020 | 56 | 2020 |
| Evaluation of different N-glycopeptide enrichment methods for N-glycosylation sites mapping in mouse brain C Zhang, Z Ye, P Xue, Q Shu, Y Zhou, Y Ji, Y Fu, J Wang, F Yang Journal of proteome research 15 (9), 2960-2968, 2016 | 53 | 2016 |
| The role of data-independent acquisition for glycoproteomics Z Ye, SY Vakhrushev Molecular & Cellular Proteomics 20, 2021 | 51 | 2021 |
| Ultra-fast label-free quantification and comprehensive proteome coverage with narrow-window data-independent acquisition UH Guzman, A Martinez-Val, Z Ye, E Damoc, TN Arrey, A Pashkova, ... Nature biotechnology, 1-12, 2024 | 49 | 2024 |
| A deeper look at carrier proteome effects for single-cell proteomics Z Ye, TS Batth, P Rüther, JV Olsen Communications Biology 5 (1), 150, 2022 | 48 | 2022 |
| Essential functions of glycans in human epithelia dissected by a CRISPR-Cas9-engineered human organotypic skin model S Dabelsteen, EMH Pallesen, IN Marinova, MI Nielsen, M Adamopoulou, ... Developmental cell 54 (5), 669-684. e7, 2020 | 47 | 2020 |
| O‐glycan initiation directs distinct biological pathways and controls epithelial differentiation I Bagdonaite, EMH Pallesen, Z Ye, SY Vakhrushev, IN Marinova, ... EMBO reports 21 (6), e48885, 2020 | 47 | 2020 |
| Probing the contribution of individual polypeptide GalNAc-transferase isoforms to the O-glycoproteome by inducible expression in isogenic cell lines J Hintze, Z Ye, Y Narimatsu, TD Madsen, HJ Joshi, CK Goth, A Linstedt, ... Journal of Biological Chemistry 293 (49), 19064-19077, 2018 | 42 | 2018 |
| Exploring the glycosylation of mucins by use of O-glycodomain reporters recombinantly expressed in glycoengineered HEK293 cells A Konstantinidi, R Nason, T Čaval, L Sun, DM Sørensen, S Furukawa, ... Journal of Biological Chemistry 298 (4), 2022 | 27 | 2022 |
| Role of N-Glycosylation in FcγRIIIa interaction with IgG J Van Coillie, MA Schulz, AEH Bentlage, N de Haan, Z Ye, DM Geerdes, ... Frontiers in Immunology 13, 987151, 2022 | 24 | 2022 |
| One-Tip enables comprehensive proteome coverage in minimal cells and single zygotes Z Ye, P Sabatier, J Martin-Gonzalez, A Eguchi, M Lechner, O Østergaard, ... nature communications 15 (1), 2474, 2024 | 18 | 2024 |
| Global mapping of GalNAc-T isoform-specificities and O-glycosylation site-occupancy in a tissue-forming human cell line MI Nielsen, N de Haan, W Kightlinger, Z Ye, S Dabelsteen, M Li, ... Nature communications 13 (1), 6257, 2022 | 18 | 2022 |
| Narrow-window DIA: Ultra-fast quantitative analysis of comprehensive proteomes with high sequencing depth UH Guzman, A Martinez Del Val, Z Ye, E Damoc, TN Arrey, A Pashkova, ... BioRxiv, 2023.06. 02.543374, 2023 | 16 | 2023 |
| Investigating patterns of immune interaction in ovarian cancer: probing the O-glycoproteome by the macrophage galactose-like C-type lectin (MGL) C Napoletano, C Steentoff, F Battisti, Z Ye, H Rahimi, IG Zizzari, M Dionisi, ... Cancers 12 (10), 2841, 2020 | 16 | 2020 |
| Optimizing linear ion-trap data-independent acquisition toward single-cell proteomics T Phlairaharn, Z Ye, E Krismer, AK Pedersen, M Pietzner, JV Olsen, ... Analytical Chemistry 95 (26), 9881-9891, 2023 | 14 | 2023 |
Sergey VakhrushevAssociate Professor, University of CopenhagenVerified email at sund.ku.dk
