Anders Nielsen
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glmmTMB balances speed and flexibility among packages for zero-inflated generalized linear mixed modeling
ME Brooks, K Kristensen, KJ Van Benthem, A Magnusson, CW Berg, ...
The R journal 9 (2), 378-400, 2017
AD Model Builder: using automatic differentiation for statistical inference of highly parameterized complex nonlinear models
DA Fournier, HJ Skaug, J Ancheta, J Ianelli, A Magnusson, MN Maunder, ...
Optimization Methods and Software 27 (2), 233-249, 2012
Getting started with the glmmADMB package
B Bolker, H Skaug, A Magnusson, A Nielsen
TMB: Automatic differentiation and laplace approximation
K Kristensen, A Nielsen, CW Berg, HJ Skaug, B Bell
Journal of Statistical Software 70 (5), 1-21, 2016
Modeling zero-inflated count data with glmmTMB
ME Brooks, K Kristensen, KJ van Benthem, A Magnusson, CW Berg, ...
BioRxiv, 132753, 2017
Estimation of time-varying selectivity in stock assessments using state-space models
A Nielsen, CW Berg
Fisheries Research 158, 96-101, 2014
Postrelease survival, vertical and horizontal movements, and thermal habitats of five species of pelagic sharks in the central Pacific Ocean
MK Musyl, R Brill, DS Curran, NM Fragoso, L McNaughton, A Nielsen, ...
Fishery Bulletin 109 (4), 341, 2011
Improving light‐based geolocation by including sea surface temperature
A Nielsen, KA Bigelow, MK Musyl, JR Sibert
Fisheries Oceanography 15 (4), 314-325, 2006
Improving light and temperature based geolocation by unscented Kalman filtering
CH Lam, A Nielsen, JR Sibert
Fisheries Research 91 (1), 15-25, 2008
Preventing the collapse of the Baltic cod stock through an ecosystem-based management approach
M Lindegren, C Möllmann, A Nielsen, NC Stenseth
Proceedings of the National Academy of Sciences 106 (34), 14722-14727, 2009
A guide to state–space modeling of ecological time series
M Auger‐Méthé, K Newman, D Cole, F Empacher, R Gryba, AA King, ...
Ecological Monographs 91 (4), e01470, 2021
Strategies for fitting nonlinear ecological models in R, AD M odel B uilder, and BUGS
BM Bolker, B Gardner, M Maunder, CW Berg, M Brooks, L Comita, ...
Methods in Ecology and Evolution 4 (6), 501-512, 2013
State–space model for light-based tracking of marine animals
A Nielsen, JR Sibert
Canadian Journal of Fisheries and Aquatic Sciences 64 (8), 1055-1068, 2007
Ecological forecasting under climate change: the case of Baltic cod
M Lindegren, C Möllmann, A Nielsen, K Brander, BR MacKenzie, ...
Proceedings of the Royal Society B: Biological Sciences 277 (1691), 2121-2130, 2010
Simulation testing the robustness of stock assessment models to error: some results from the ICES strategic initiative on stock assessment methods
JJ Deroba, DS Butterworth, RD Methot Jr, JAA De Oliveira, C Fernandez, ...
ICES Journal of Marine Science 72 (1), 19-30, 2015
Review of state-space models for fisheries science
WH Aeberhard, J Mills Flemming, A Nielsen
Annual Review of Statistics and Its Application 5, 215-235, 2018
Interannual variation in large-scale movement of Atlantic bluefin tuna (Thunnus thynnus) determined from pop-up satellite archival tags
JR Sibert, ME Lutcavage, A Nielsen, RW Brill, SG Wilson
Canadian Journal of Fisheries and Aquatic Sciences 63 (10), 2154-2166, 2006
Validation of ecological state space models using the Laplace approximation
UH Thygesen, CM Albertsen, CW Berg, K Kristensen, A Nielsen
Environmental and Ecological Statistics 24, 317-339, 2017
Incorporating sea-surface temperature to the light-based geolocation model TrackIt
CH Lam, A Nielsen, JR Sibert
Marine Ecology Progress Series 419, 71-84, 2010
Essential features of the next-generation integrated fisheries stock assessment package: a perspective
AE Punt, A Dunn, BÞ Elvarsson, J Hampton, SD Hoyle, MN Maunder, ...
Fisheries Research 229, 105617, 2020
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