| Canu: scalable and accurate long-read assembly via adaptive k-mer weighting and repeat separation S Koren, BP Walenz, K Berlin, JR Miller, NH Bergman, AM Phillippy Genome research 27 (5), 722-736, 2017 | 6337 | 2017 |
| Versatile and open software for comparing large genomes S Kurtz, A Phillippy, AL Delcher, M Smoot, M Shumway, C Antonescu, ... Genome biology 5, 1-9, 2004 | 5646 | 2004 |
| High throughput ANI analysis of 90K prokaryotic genomes reveals clear species boundaries C Jain, LM Rodriguez-R, AM Phillippy, KT Konstantinidis, S Aluru Nature communications 9 (1), 5114, 2018 | 3463 | 2018 |
| Mash: fast genome and metagenome distance estimation using MinHash BD Ondov, TJ Treangen, P Melsted, AB Mallonee, NH Bergman, S Koren, ... Genome biology 17, 1-14, 2016 | 2620 | 2016 |
| Evolution of genes and genomes on the Drosophila phylogeny AG Clark, MB Eisen, DR Smith, CM Bergman, B Oliver, TA Markow, ... Nature 450 (7167), 203-18, 2007 | 2257 | 2007 |
| The complete sequence of a human genome S Nurk, S Koren, A Rhie, M Rautiainen, AV Bzikadze, A Mikheenko, ... Science 376 (6588), 44-53, 2022 | 2233 | 2022 |
| Interactive metagenomic visualization in a Web browser BD Ondov, NH Bergman, AM Phillippy BMC bioinformatics 12, 1-10, 2011 | 1990 | 2011 |
| Nanopore sequencing and assembly of a human genome with ultra-long reads M Jain, S Koren, KH Miga, J Quick, AC Rand, TA Sasani, JR Tyson, ... Nature biotechnology 36 (4), 338-345, 2018 | 1950 | 2018 |
| Towards complete and error-free genome assemblies of all vertebrate species A Rhie, SA McCarthy, O Fedrigo, J Damas, G Formenti, S Koren, ... Nature 592 (7856), 737-746, 2021 | 1831 | 2021 |
| MUMmer4: A fast and versatile genome alignment system G Marçais, AL Delcher, AM Phillippy, R Coston, SL Salzberg, A Zimin PLoS computational biology 14 (1), e1005944, 2018 | 1643 | 2018 |
| Merqury: reference-free quality, completeness, and phasing assessment for genome assemblies A Rhie, BP Walenz, S Koren, AM Phillippy Genome biology 21, 1-27, 2020 | 1626 | 2020 |
| The Harvest suite for rapid core-genome alignment and visualization of thousands of intraspecific microbial genomes TJ Treangen, BD Ondov, S Koren, AM Phillippy Genome Biol 15 (11), 524, 2014 | 1566 | 2014 |
| Accurate circular consensus long-read sequencing improves variant detection and assembly of a human genome AM Wenger, P Peluso, WJ Rowell, PC Chang, RJ Hall, GT Concepcion, ... Nature biotechnology 37 (10), 1155-1162, 2019 | 1434 | 2019 |
| Fast algorithms for large-scale genome alignment and comparison AL Delcher, A Phillippy, J Carlton, SL Salzberg Nucleic acids research 30 (11), 2478-2483, 2002 | 1248 | 2002 |
| Hybrid error correction and de novo assembly of single-molecule sequencing reads S Koren, MC Schatz, BP Walenz, J Martin, JT Howard, G Ganapathy, ... Nature biotechnology 30 (7), 693-700, 2012 | 1214 | 2012 |
| Assembling large genomes with single-molecule sequencing and locality-sensitive hashing K Berlin, S Koren, CS Chin, JP Drake, JM Landolin, AM Phillippy Nature biotechnology 33 (6), 623-630, 2015 | 1077 | 2015 |
| Evaluation of GRCh38 and de novo haploid genome assemblies demonstrates the enduring quality of the reference assembly VA Schneider, T Graves-Lindsay, K Howe, N Bouk, HC Chen, PA Kitts, ... Genome research 27 (5), 849-864, 2017 | 972 | 2017 |
| GAGE: A critical evaluation of genome assemblies and assembly algorithms SL Salzberg, AM Phillippy, A Zimin, D Puiu, T Magoc, S Koren, ... Genome research 22 (3), 557-567, 2012 | 893 | 2012 |
| Assemblathon 2: evaluating de novo methods of genome assembly in three vertebrate species KR Bradnam, JN Fass, A Alexandrov, P Baranay, M Bechner, I Birol, ... Gigascience 2 (1), 2047-217X-2-10, 2013 | 810 | 2013 |
| Telomere-to-telomere assembly of a complete human X chromosome KH Miga, S Koren, A Rhie, MR Vollger, A Gershman, A Bzikadze, ... Nature 585 (7823), 79-84, 2020 | 725 | 2020 |
Sergey KorenAssociate Investigator, NHGRI/NIHVerified email at nih.gov
