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James Tiedje
James Tiedje
University Distinguished Professor Emeritus, Michigan State University
Verified email at msu.edu
Title
Cited by
Cited by
Year
Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy
Q Wang, GM Garrity, JM Tiedje, JR Cole
Applied and environmental microbiology 73 (16), 5261-5267, 2007
195852007
The Ribosomal Database Project: improved alignments and new tools for rRNA analysis
JR Cole, Q Wang, E Cardenas, J Fish, B Chai, RJ Farris, ...
Nucleic acids research 37 (suppl_1), D141-D145, 2009
54632009
Ribosomal Database Project: data and tools for high throughput rRNA analysis
JR Cole, Q Wang, JA Fish, B Chai, DM McGarrell, Y Sun, CT Brown, ...
Nucleic acids research 42 (D1), D633-D642, 2014
43822014
DNA–DNA hybridization values and their relationship to whole-genome sequence similarities
J Goris, KT Konstantinidis, JA Klappenbach, T Coenye, P Vandamme, ...
International journal of systematic and evolutionary microbiology 57 (1), 81-91, 2007
43562007
DNA recovery from soils of diverse composition
J Zhou, MA Bruns, JM Tiedje
Applied and environmental microbiology 62 (2), 316-322, 1996
39641996
Diverse and abundant antibiotic resistance genes in Chinese swine farms
YG Zhu, TA Johnson, JQ Su, M Qiao, GX Guo, RD Stedtfeld, ...
Proceedings of the National Academy of Sciences 110 (9), 3435-3440, 2013
23842013
Ecology of denitrification and dissimilatory nitrate reduction to ammonium
T JM
Biology of anaerobic microorganisms, 179-244, 1988
22051988
The RDP (ribosomal database project) continues
BL Maidak, JR Cole, TG Lilburn, CT Parker Jr, PR Saxman, JM Stredwick, ...
Nucleic acids research 28 (1), 173-174, 2000
21872000
Genomic insights that advance the species definition for prokaryotes
KT Konstantinidis, JM Tiedje
Proceedings of the National Academy of Sciences 102 (7), 2567-2572, 2005
21612005
Health risks from exposure to low levels of ionizing radiation: BEIR VII phase 2
National Research Council, Division on Earth, Life Studies, ...
National Academies Press, 2006
2066*2006
The Ribosomal Database Project (RDP-II): sequences and tools for high-throughput rRNA analysis
JR Cole, B Chai, RJ Farris, Q Wang, SA Kulam, DM McGarrell, GM Garrity, ...
Nucleic acids research 33 (suppl_1), D294-D296, 2005
17672005
The Ribosomal Database Project (RDP-II): previewing a new autoaligner that allows regular updates and the new prokaryotic taxonomy
JR Cole, B Chai, TL Marsh, RJ Farris, Q Wang, SA Kulam, S Chandra, ...
Nucleic acids research 31 (1), 442-443, 2003
16842003
The ribosomal database project (RDP-II): introducing myRDP space and quality controlled public data
JR Cole, B Chai, RJ Farris, Q Wang, AS Kulam-Syed-Mohideen, ...
Nucleic acids research 35 (suppl_1), D169-D172, 2007
13272007
Using the class 1 integron-integrase gene as a proxy for anthropogenic pollution
MR Gillings, WH Gaze, A Pruden, K Smalla, JM Tiedje, YG Zhu
The ISME journal 9 (6), 1269-1279, 2015
11682015
Denitrification
JM Tiedje
Methods of Soil Analysis: Part 2 Chemical and Microbiological Properties 9 …, 1982
1132*1982
In-feed antibiotic effects on the swine intestinal microbiome
T Looft, TA Johnson, HK Allen, DO Bayles, DP Alt, RD Stedtfeld, WJ Sul, ...
Proceedings of the National Academy of Sciences 109 (5), 1691-1696, 2012
11242012
Towards a genome-based taxonomy for prokaryotes
KT Konstantinidis, JM Tiedje
Journal of bacteriology 187 (18), 6258-6264, 2005
10952005
Microbial reductive dehalogenation
WW Mohn, JM Tiedje
Microbiological reviews 56 (3), 482-507, 1992
10481992
Towards environmental systems biology of Shewanella
JK Fredrickson, MF Romine, AS Beliaev, JM Auchtung, ME Driscoll, ...
Nature Reviews Microbiology 6 (8), 592-603, 2008
10442008
Metagenomic and network analysis reveal wide distribution and co-occurrence of environmental antibiotic resistance genes
B Li, Y Yang, L Ma, F Ju, F Guo, JM Tiedje, T Zhang
The ISME journal 9 (11), 2490-2502, 2015
10202015
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