Felipe Zapata
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Phylogenomic analyses support traditional relationships within Cnidaria
F Zapata, FE Goetz, SA Smith, M Howison, S Siebert, SH Church, ...
PloS one 10 (10), e0139068, 2015
Plant Ontology (PO): a controlled vocabulary of plant structures and growth stages
P Jaiswal, S Avraham, K Ilic, EA Kellogg, S McCouch, A Pujar, L Reiser, ...
Comparative and functional genomics 6 (7‐8), 388-397, 2005
The Plant Ontology Database: a community resource for plant structure and developmental stages controlled vocabulary and annotations
S Avraham, CW Tung, K Ilic, P Jaiswal, EA Kellogg, S McCouch, A Pujar, ...
Nucleic acids research 36 (suppl_1), D449-D454, 2008
Phylogenomic analyses of deep gastropod relationships reject Orthogastropoda
F Zapata, NG Wilson, M Howison, SCS Andrade, KM Jörger, M Schrödl, ...
Proceedings of the Royal Society B: Biological Sciences 281 (1794), 20141739, 2014
Agalma: an automated phylogenomics workflow
CW Dunn, M Howison, F Zapata
BMC bioinformatics 14 (1), 1-9, 2013
The plant structure ontology, a unified vocabulary of anatomy and morphology of a flowering plant
K Ilic, EA Kellogg, P Jaiswal, F Zapata, PF Stevens, LP Vincent, ...
Plant physiology 143 (2), 587-599, 2007
Investigating processes of neotropical rain forest tree diversification by examining the evolution and historical biogeography of the Protieae (Burseraceae)
PVA Fine, F Zapata, DC Daly
Evolution 68 (7), 1988-2004, 2014
Species Delimitation: Inferring Gaps in Morphology across Geography
F Zapata, I Jiménez
Systematic Biology 61 (2), 179-194, 2012
To move or to evolve: contrasting patterns of intercontinental connectivity and climatic niche evolution in “Terebinthaceae”(Anacardiaceae and Burseraceae)
A Weeks, F Zapata, SK Pell, DC Daly, JD Mitchell, PVA Fine
Frontiers in Genetics 5, 409, 2014
Pairwise comparisons across species are problematic when analyzing functional genomic data
CW Dunn, F Zapata, C Munro, S Siebert, A Hejnol
Proceedings of the National Academy of Sciences 115 (3), E409-E417, 2018
Issues and perspectives in species delimitation using phenotypic data: Atlantean evolution in Darwin’s finches
CD Cadena, F Zapata, I Jiménez
Systematic Biology 67 (2), 181-194, 2018
Whole-plant growth stage ontology for angiosperms and its application in plant biology
A Pujar, P Jaiswal, EA Kellogg, K Ilic, L Vincent, S Avraham, P Stevens, ...
Plant Physiology 142 (2), 414-428, 2006
The importance of environmental heterogeneity and spatial distance in generating phylogeographic structure in edaphic specialist and generalist tree species of Protium …
PVA Fine, F Zapata, DC Daly, I Mesones, TM Misiewicz, HF Cooper, ...
Journal of Biogeography, 2013
Plant science decadal vision 2020–2030: Reimagining the potential of plants for a healthy and sustainable future
N Henkhaus, M Bartlett, D Gang, R Grumet, I Jordon‐Thaden, A Lorence, ...
Plant Direct 4 (8), e00252, 2020
The genomic revolution and species delimitation in birds (and other organisms): Why phenotypes should not be overlooked
CD Cadena, F Zapata
The Auk 138 (2), ukaa069, 2021
A multilocus phylogenetic analysis of Escallonia (Escalloniaceae): Diversification in montane South America
F Zapata
American Journal of Botany 100 (3), 526-545, 2013
Improved phylogenetic resolution within Siphonophora (Cnidaria) with implications for trait evolution
C Munro, S Siebert, F Zapata, M Howison, A Damian-Serrano, SH Church, ...
Molecular phylogenetics and evolution 127, 823-833, 2018
Toward a statistically explicit understanding of de novo sequence assembly
M Howison, F Zapata, CW Dunn
Bioinformatics 29 (23), 2959-2963, 2013
Natural selection maintains species despite frequent hybridization in the desert shrub Encelia
CT DiVittorio, S Singhal, AB Roddy, F Zapata, DD Ackerly, BG Baldwin, ...
Proceedings of the National Academy of Sciences 117 (52), 33373-33383, 2020
Diversification of the monoterpene synthase gene family (TPSb) in Protium, a highly diverse genus of tropical trees
F Zapata, PVA Fine
Molecular phylogenetics and evolution 68 (3), 432-442, 2013
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