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Adina Howe
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Revealing the bacterial butyrate synthesis pathways by analyzing (meta) genomic data
M Vital, AC Howe, JM Tiedje
MBio 5 (2), 10.1128/mbio. 00889-14, 2014
9262014
Microbial activity in forest soil reflects the changes in ecosystem properties between summer and winter
L Žifčáková, T Větrovský, A Howe, P Baldrian
Environmental microbiology 18 (1), 288-301, 2016
4002016
The khmer software package: enabling efficient nucleotide sequence analysis
MR Crusoe, HF Alameldin, S Awad, E Boucher, A Caldwell, R Cartwright, ...
F1000Research 4, 2015
3682015
Tackling soil diversity with the assembly of large, complex metagenomes
AC Howe, JK Jansson, SA Malfatti, SG Tringe, JM Tiedje, CT Brown
Proceedings of the National Academy of Sciences 111 (13), 4904-4909, 2014
3572014
Demonstrating microbial co-occurrence pattern analyses within and between ecosystems
RJ Williams, A Howe, KS Hofmockel
Frontiers in microbiology 5, 87190, 2014
3192014
A meta-analysis of global fungal distribution reveals climate-driven patterns
T Větrovský, P Kohout, M Kopecký, A Machac, M Man, BD Bahnmann, ...
Nature communications 10 (1), 5142, 2019
2902019
Scaling metagenome sequence assembly with probabilistic de Bruijn graphs
J Pell, A Hintze, R Canino-Koning, A Howe, JM Tiedje, CT Brown
Proceedings of the National Academy of Sciences 109 (33), 13272-13277, 2012
2812012
A reference-free algorithm for computational normalization of shotgun sequencing data
CT Brown, A Howe, Q Zhang, AB Pyrkosz, TH Brom
arXiv preprint arXiv:1203.4802, 2012
2512012
The genome and developmental transcriptome of the strongylid nematode Haemonchus contortus
EM Schwarz, PK Korhonen, BE Campbell, ND Young, AR Jex, A Jabbar, ...
Genome biology 14, 1-18, 2013
2312013
Complexities in understanding antimicrobial resistance across domesticated animal, human, and environmental systems
DW Graham, G Bergeron, MW Bourassa, J Dickson, F Gomes, A Howe, ...
Annals of the New York Academy of Sciences 1441 (1), 17-30, 2019
1692019
Feed in summer, rest in winter: microbial carbon utilization in forest topsoil
L Žifčáková, T Větrovský, V Lombard, B Henrissat, A Howe, P Baldrian
Microbiome 5, 1-12, 2017
1422017
Primer set 2.0 for highly parallel qPCR array targeting antibiotic resistance genes and mobile genetic elements
RD Stedtfeld, X Guo, TM Stedtfeld, H Sheng, MR Williams, K Hauschild, ...
FEMS Microbiology Ecology 94 (9), fiy130, 2018
1242018
Strategies to improve reference databases for soil microbiomes
J Choi, F Yang, R Stepanauskas, E Cardenas, A Garoutte, R Williams, ...
The ISME journal 11 (4), 829-834, 2017
1092017
Divergent responses of viral and bacterial communities in the gut microbiome to dietary disturbances in mice
A Howe, DL Ringus, RJ Williams, ZN Choo, SM Greenwald, SM Owens, ...
The ISME journal 10 (5), 1217-1227, 2016
982016
Metagenomic approaches for direct and cell culture evaluation of the virological quality of wastewater
TG Aw, A Howe, JB Rose
Journal of virological methods 210, 15-21, 2014
952014
These are not the k-mers you are looking for: efficient online k-mer counting using a probabilistic data structure
Q Zhang, J Pell, R Canino-Koning, AC Howe, CT Brown
PloS one 9 (7), e101271, 2014
952014
Metagenomic insights into the degradation of resistant starch by human gut microbiota
M Vital, A Howe, N Bergeron, RM Krauss, JK Jansson, JM Tiedje
Applied and environmental microbiology 84 (23), e01562-18, 2018
852018
Characterizing the soil microbiome and quantifying antibiotic resistance gene dynamics in agricultural soil following swine CAFO manure application
E Lopatto, J Choi, A Colina, L Ma, A Howe, S Hinsa-Leasure
PLoS One 14 (8), e0220770, 2019
552019
Temporal dynamics of bacterial communities in soil and leachate water after swine manure application
EL Rieke, ML Soupir, TB Moorman, F Yang, AC Howe
Frontiers in microbiology 9, 3197, 2018
492018
Revealing the bacterial butyrate synthesis pathways by analyzing (meta) genomic data. mBio 5: e00889-14
M Vital, AC Howe, JM Tiedje
472014
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