Emily Jane McTavish
Emily Jane McTavish
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Cited by
Cited by
Synthesis of phylogeny and taxonomy into a comprehensive tree of life
CE Hinchliff, SA Smith, JF Allman, JG Burleigh, R Chaudhary, LM Coghill, ...
Proceedings of the National Academy of Sciences 112 (41), 12764-12769, 2015
New World cattle show ancestry from multiple independent domestication events
EJ McTavish, JE Decker, RD Schnabel, JF Taylor, DM Hillis
Proceedings of the National Academy of Sciences 110 (15), E1398-E1406, 2013
How do SNP ascertainment schemes and population demographics affect inferences about population history?
EJ McTavish, DM Hillis
BMC genomics 16, 1-13, 2015
Phylotastic! Making tree-of-life knowledge accessible, reusable and convenient
A Stoltzfus, H Lapp, N Matasci, H Deus, B Sidlauskas, CM Zmasek, ...
BMC bioinformatics 14, 1-17, 2013
Phylesystem: a git-based data store for community-curated phylogenetic estimates
EJ McTavish, CE Hinchliff, JF Allman, JW Brown, KA Cranston, MT Holder, ...
Bioinformatics 31 (17), 2794-2800, 2015
Landscape analyses using eDNA metabarcoding and Earth observation predict community biodiversity in California
M Lin, AL Simons, RJ Harrigan, EE Curd, FD Schneider, DV Ruiz‐Ramos, ...
Ecological Applications 31 (6), e02379, 2021
How and why to build a unified tree of life
EJ McTavish, BT Drew, B Redelings, KA Cranston
BioEssays 39 (11), 1700114, 2017
Color polymorphism is a driver of diversification in the lizard family Lacertidae
KM Brock, EJ McTavish, DL Edwards
Systematic Biology 71 (1), 24-39, 2022
A genomic approach for distinguishing between recent and ancient admixture as applied to cattle
EJ McTavish, DM Hillis
Journal of Heredity 105 (4), 445-456, 2014
TreeToReads-a pipeline for simulating raw reads from phylogenies
EJ McTavish, J Pettengill, S Davis, H Rand, E Strain, M Allard, RE Timme
BMC bioinformatics 18, 1-7, 2017
DateLife: leveraging databases and analytical tools to reveal the dated Tree of Life
LL Sánchez Reyes, EJ McTavish, B O’Meara
Systematic Biology, syae015, 2024
Twisted trees and inconsistency of tree estimation when gaps are treated as missing data–The impact of model mis-specification in distance corrections
EJ McTavish, M Steel, MT Holder
Molecular phylogenetics and evolution 93, 289-295, 2015
OpenTree: A Python package for Accessing and Analyzing data from the Open Tree of Life
EJ McTavish, LL Sánchez-Reyes, MT Holder
Systematic Biology 70 (6), 1295-1301, 2021
A biodiversity composition map of California derived from environmental DNA metabarcoding and Earth observation
M Lin, AL Simons, EE Curd, RJ Harrigan, FD Schneider, DV Ruiz-Ramos, ...
BioRxiv, 2020.06. 19.160374, 2020
Variation in flight morphology in a damselfly with female-limited polymorphism
EJ MTavish, GK Smith, RF Guerrero, EJ Gering
Evolutionary Ecology Research 14 (3), 325-341, 2012
Leveraging shared ancestral variation to detect local introgression
L Lopez Fang, D Peede, D Ortega-Del Vecchyo, EJ McTavish, ...
PLoS Genetics 20 (1), e1010155, 2024
Rapid alignment updating with Extensiphy
JT Field, AJ Abrams, JC Cartee, EJ McTavish
Methods in Ecology and Evolution 13 (3), 682-693, 2022
Physcraper: a Python package for continually updated phylogenetic trees using the Open Tree of Life
LL Sánchez-Reyes, M Kandziora, EJ McTavish
BMC bioinformatics 22, 1-13, 2021
Phylogenetic tree comparison
MT Holder, EJ McTavish
Academic Press, 2016
Approachable case studies support learning and reproducibility in data science: An example from evolutionary biology
LL Sanchez Reyes, EJ McTavish
Journal of Statistics and Data Science Education 30 (3), 304-310, 2022
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