| Call of the wild: antibiotic resistance genes in natural environments HK Allen, J Donato, HH Wang, KA Cloud-Hansen, J Davies, ... Nature reviews microbiology 8 (4), 251-259, 2010 | 2707 | 2010 |
| In-feed antibiotic effects on the swine intestinal microbiome T Looft, TA Johnson, HK Allen, DO Bayles, DP Alt, RD Stedtfeld, WJ Sul, ... Proceedings of the National Academy of Sciences 109 (5), 1691-1696, 2012 | 1142 | 2012 |
| Functional metagenomics reveals diverse β-lactamases in a remote Alaskan soil HK Allen, LA Moe, J Rodbumrer, A Gaarder, J Handelsman The ISME journal 3 (2), 243-251, 2009 | 650 | 2009 |
| Bacteria, phages and pigs: the effects of in-feed antibiotics on the microbiome at different gut locations T Looft, HK Allen, BL Cantarel, UY Levine, DO Bayles, DP Alt, B Henrissat, ... The ISME journal 8 (8), 1566-1576, 2014 | 443 | 2014 |
| Treatment, promotion, commotion: antibiotic alternatives in food-producing animals HK Allen, UY Levine, T Looft, M Bandrick, TA Casey Trends in microbiology 21 (3), 114-119, 2013 | 425 | 2013 |
| Finding alternatives to antibiotics HK Allen, J Trachsel, T Looft, TA Casey Annals of the New York Academy of Sciences 1323 (1), 91-100, 2014 | 304 | 2014 |
| Intracellular screen to identify metagenomic clones that induce or inhibit a quorum-sensing biosensor LL Williamson, BR Borlee, PD Schloss, C Guan, HK Allen, J Handelsman Applied and environmental microbiology 71 (10), 6335-6344, 2005 | 249 | 2005 |
| Meta-analysis to define a core microbiota in the swine gut DB Holman, BW Brunelle, J Trachsel, HK Allen MSystems 2 (3), 10.1128/msystems. 00004-17, 2017 | 238 | 2017 |
| Antibiotics in feed induce prophages in swine fecal microbiomes HK Allen, T Looft, DO Bayles, S Humphrey, UY Levine, D Alt, TB Stanton MBio 2 (6), 10.1128/mbio. 00260-11, 2011 | 225 | 2011 |
| Collateral effects of antibiotics on mammalian gut microbiomes T Looft, HK Allen Gut microbes 3 (5), 463-467, 2012 | 210 | 2012 |
| Antibiotic resistance gene discovery in food-producing animals HK Allen Current Opinion in Microbiology 19, 25-29, 2014 | 133 | 2014 |
| Carbadox has both temporary and lasting effects on the swine gut microbiota T Looft, HK Allen, TA Casey, DP Alt, TB Stanton Frontiers in microbiology 5, 276, 2014 | 122 | 2014 |
| Psychrotrophic strain of Janthinobacterium lividum from a cold Alaskan soil produces prodigiosin PD Schloss, HK Allen, AK Klimowicz, C Mlot, JA Gross, S Savengsuksa, ... DNA and cell biology 29 (9), 533-541, 2010 | 119 | 2010 |
| Altered egos: antibiotic effects on food animal microbiomes HK Allen, TB Stanton Annual review of microbiology 68 (1), 297-315, 2014 | 115 | 2014 |
| Resident microbiota of the gypsy moth midgut harbors antibiotic resistance determinants HK Allen, KA Cloud-Hansen, JM Wolinski, C Guan, S Greene, S Lu, ... DNA and cell biology 28 (3), 109-117, 2009 | 115 | 2009 |
| The agricultural antibiotic carbadox induces phage-mediated gene transfer in Salmonella BL Bearson, HK Allen, BW Brunelle, IS Lee, SR Casjens, TB Stanton Frontiers in microbiology 5, 52, 2014 | 99 | 2014 |
| A DNA barcoding framework for taxonomic verification in the Darwin Tree of Life Project AD Twyford, J Beasley, I Barnes, H Allen, F Azzopardi, D Bell, ML Blaxter, ... Wellcome Open Research 9, 339, 2024 | 98 | 2024 |
| Profiling the gastrointestinal microbiota in response to Salmonella: low versus high Salmonella shedding in the natural porcine host SMD Bearson, HK Allen, BL Bearson, T Looft, BW Brunelle, JD Kich, ... Infection, Genetics and Evolution 16, 330-340, 2013 | 98 | 2013 |
| A sampling strategy for genome sequencing the British terrestrial arthropod fauna L Crowley, H Allen, I Barnes, D Boyes, GR Broad, C Fletcher, ... Wellcome Open Research 8, 2023 | 96 | 2023 |
| Butyrate-producing bacteria, including mucin degraders, from the swine intestinal tract UY Levine, T Looft, HK Allen, TB Stanton Applied and environmental microbiology 79 (12), 3879-3881, 2013 | 91 | 2013 |
Torey LooftResearch microbiologistVerified email at usda.gov
