Deepak Bandyopadhyay
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Shader lamps: Animating real objects with image-based illumination
R Raskar, G Welch, KL Low, D Bandyopadhyay
Rendering Techniques 2001: Proceedings of the Eurographics Workshop in …, 2001
Discovery of a first-in-class receptor interacting protein 1 (RIP1) kinase specific clinical candidate (GSK2982772) for the treatment of inflammatory diseases
PA Harris, SB Berger, JU Jeong, R Nagilla, D Bandyopadhyay, ...
Journal of medicinal chemistry 60 (4), 1247-1261, 2017
Dynamic shader lamps: Painting on movable objects
D Bandyopadhyay, R Raskar, H Fuchs
Proceedings IEEE and ACM International Symposium on Augmented Reality, 207-216, 2001
DNA-Encoded Library Screening Identifies Benzo[b][1,4]oxazepin-4-ones as Highly Potent and Monoselective Receptor Interacting Protein 1 Kinase Inhibitors
PA Harris, BW King, D Bandyopadhyay, SB Berger, N Campobasso, ...
Journal of medicinal chemistry 59 (5), 2163-2178, 2016
Mining protein family specific residue packing patterns from protein structure graphs
J Huan, W Wang, D Bandyopadhyay, J Snoeyink, J Prins, A Tropsha
Proceedings of the eighth annual international conference on Research in …, 2004
Discovery of small molecule RIP1 kinase inhibitors for the treatment of pathologies associated with necroptosis
PA Harris, D Bandyopadhyay, SB Berger, N Campobasso, CA Capriotti, ...
ACS medicinal chemistry letters 4 (12), 1238-1243, 2013
Comparing graph representations of protein structure for mining family-specific residue-based packing motifs
J Huan, D Bandyopadhyay, W Wang, J Snoeyink, J Prins, A Tropsha
Journal of Computational Biology 12 (6), 657-671, 2005
Almost-Delaunay simplices: nearest neighbor relations for imprecise points.
D Bandyopadhyay, J Snoeyink
SODA 4, 410-419, 2004
Recent advances in chemoinformatics
DK Agrafiotis, D Bandyopadhyay, JK Wegner, H van Vlijmen
Journal of chemical information and modeling 47 (4), 1279-1293, 2007
Structure‐based function inference using protein family‐specific fingerprints
D Bandyopadhyay, J Huan, J Liu, J Prins, J Snoeyink, W Wang, ...
Protein Science 15 (6), 1537-1543, 2006
Discovery and lead-optimization of 4, 5-dihydropyrazoles as mono-kinase selective, orally bioavailable and efficacious inhibitors of receptor interacting protein 1 (RIP1) kinase
PA Harris, N Faucher, N George, PM Eidam, BW King, GV White, ...
Journal of Medicinal Chemistry 62 (10), 5096-5110, 2019
Stochastic proximity embedding: methods and applications
DK Agrafiotis, H Xu, F Zhu, D Bandyopadhyay, P Liu
Molecular informatics 29 (11), 758-770, 2010
Radial clustergrams: visualizing the aggregate properties of hierarchical clusters
DK Agrafiotis, D Bandyopadhyay, M Farnum
Journal of chemical information and modeling 47 (1), 69-75, 2007
Distance-based identification of structure motifs in proteins using constrained frequent subgraph mining
J Huan, D Bandyopadhyay, J Prins, J Snoeyink, A Tropsha, W Wang
Computational Systems Bioinformatics, 227-238, 2006
Heterocyclic amides as kinase inhibitors
JU Jeong
US Patent 9,624,202, 2017
Perspectives on the discovery of small-molecule modulators for epigenetic processes
Q Lu, AM Quinn, MP Patel, SF Semus, AP Graves, D Bandyopadhyay, ...
Journal of biomolecular screening 17 (5), 555-571, 2012
A self‐organizing algorithm for molecular alignment and pharmacophore development
D Bandyopadhyay, DK Agrafiotis
Journal of computational chemistry 29 (6), 965-982, 2008
Almost-Delaunay simplices: Robust neighbor relations for imprecise 3D points using CGAL
D Bandyopadhyay, J Snoeyink
Computational Geometry 38 (1-2), 4-15, 2007
Identification of family-specific residue packing motifs and their use for structure-based protein function prediction: I. Method development
D Bandyopadhyay, J Huan, J Prins, J Snoeyink, W Wang, A Tropsha
Journal of computer-aided molecular design 23, 773-784, 2009
On the Effects of Permuted Input on Conformational Sampling of Drug‐like Molecules: an Evaluation of Stochastic Proximity Embedding
DK Agrafiotis, D Bandyopadhyay, G Carta, AJS Knox, DG Lloyd
Chemical Biology & Drug Design 70 (2), 123-133, 2007
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