| The molecular taxonomy of primary prostate cancer CGAR Network Cell 163 (4), 1011-1025, 2015 | 2763* | 2015 |
| Pan-cancer analysis of whole genomes Nature 578 (7793), 82-93, 2020 | 1969* | 2020 |
| Multiplatform analysis of 12 cancer types reveals molecular classification within and across tissues of origin KA Hoadley, C Yau, DM Wolf, AD Cherniack, D Tamborero, S Ng, ... Cell 158 (4), 929-944, 2014 | 1586 | 2014 |
| Comprehensive analysis of alternative splicing across tumors from 8,705 patients A Kahles, KV Lehmann, NC Toussaint, M Hüser, SG Stark, ... Cancer cell 34 (2), 211-224. e6, 2018 | 802 | 2018 |
| Assessment of transcript reconstruction methods for RNA-seq T Steijger, JF Abril, PG Engström, F Kokocinski, TJ Hubbard, R Guigó, ... Nature methods 10 (12), 1177-1184, 2013 | 792 | 2013 |
| Multiple reference genomes and transcriptomes for Arabidopsis thaliana X Gan, O Stegle, J Behr, JG Steffen, P Drewe, KL Hildebrand, R Lyngsoe, ... Nature 477 (7365), 419-423, 2011 | 761 | 2011 |
| Systematic evaluation of spliced alignment programs for RNA-seq data PG Engström, T Steijger, B Sipos, GR Grant, A Kahles, G Rätsch, ... Nature methods 10 (12), 1185-1191, 2013 | 611 | 2013 |
| Analyses of non-coding somatic drivers in 2,658 cancer whole genomes E Rheinbay, MM Nielsen, F Abascal, JA Wala, O Shapira, G Tiao, ... Nature 578 (7793), 102-111, 2020 | 570 | 2020 |
| DNA methylation in Arabidopsis has a genetic basis and shows evidence of local adaptation MJ Dubin, P Zhang, D Meng, MS Remigereau, EJ Osborne, ... elife 4, e05255, 2015 | 514 | 2015 |
| Genomic basis for RNA alterations in cancer PCAWG Transcriptome Core Group Calabrese Claudia 2 Davidson Natalie R. 3 4 5 ... Nature 578 (7793), 129-136, 2020 | 303 | 2020 |
| A global metagenomic map of urban microbiomes and antimicrobial resistance D Danko, D Bezdan, EE Afshin, S Ahsanuddin, C Bhattacharya, DJ Butler, ... Cell 184 (13), 3376-3393. e17, 2021 | 257 | 2021 |
| Nonsense-Mediated Decay of Alternative Precursor mRNA Splicing Variants Is a Major Determinant of the Arabidopsis Steady State Transcriptome G Drechsel, A Kahles, AK Kesarwani, E Stauffer, J Behr, P Drewe, ... The Plant Cell 25 (10), 3726-3742, 2013 | 238 | 2013 |
| Biosynthetic potential of the global ocean microbiome L Paoli, HJ Ruscheweyh, CC Forneris, F Hubrich, S Kautsar, A Bhushan, ... Nature 607 (7917), 111-118, 2022 | 233 | 2022 |
| A pan-cancer transcriptome analysis reveals pervasive regulation through alternative promoters D Demircioğlu, E Cukuroglu, M Kindermans, T Nandi, C Calabrese, ... Cell 178 (6), 1465-1477. e17, 2019 | 181 | 2019 |
| SplAdder: identification, quantification and testing of alternative splicing events from RNA-Seq data A Kahles, CS Ong, Y Zhong, G Rätsch Bioinformatics, btw076, 2016 | 175 | 2016 |
| The Tumor Profiler Study: integrated, multi-omic, functional tumor profiling for clinical decision support A Irmisch, X Bonilla, S Chevrier, KV Lehmann, F Singer, NC Toussaint, ... Cancer Cell 39 (3), 288-293, 2021 | 111 | 2021 |
| Polypyrimidine Tract Binding Protein Homologs from Arabidopsis Are Key Regulators of Alternative Splicing with Implications in Fundamental Developmental … C Rühl, E Stauffer, A Kahles, G Wagner, G Drechsel, G Rätsch, A Wachter The Plant Cell 24 (11), 4360-4375, 2012 | 98 | 2012 |
| Alternative splicing substantially diversifies the transcriptome during early photomorphogenesis and correlates with the energy availability in Arabidopsis L Hartmann, P Drewe-Boß, T Wießner, G Wagner, S Geue, HC Lee, ... The Plant Cell 28 (11), 2715-2734, 2016 | 87 | 2016 |
| RNA‐Seq read alignments with PALMapper G Jean, A Kahles, VT Sreedharan, FD Bona, G Rätsch Current protocols in bioinformatics 32 (1), 11.6. 1-11.6. 37, 2010 | 84 | 2010 |
| MITIE: Simultaneous RNA-Seq-based transcript identification and quantification in multiple samples J Behr, A Kahles, Y Zhong, VT Sreedharan, P Drewe, G Rätsch Bioinformatics 29 (20), 2529-2538, 2013 | 76 | 2013 |
Gunnar RätschProfessor, ETH ZürichVerified email at inf.ethz.ch
