Douglas Silva Domingues

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Luiz Filipe Protasio PereiraResearcher Embrapa Café / IAPARVerified email at embrapa.br
Tiago Benedito dos SantosProfessor na Agronomia e Programa da Pós-graduação em Agronomia na Universidade do Oeste PaulistaVerified email at unoeste.br
Alexandre Rossi PaschoalGroup Leader in AI, Rosalind Franklin Institute, UK; Associate Prof, Dep. Comp. Science, UTFPR, BRAVerified email at rfi.ac.uk
Marie-Anne Van SluysUniversidade de Sao PauloVerified email at usp.br
Juliana Costa SilvaUFPR - Universidade Federal do Paraná, Universidade PositivoVerified email at ufpr.br
Fabrício Martins LopesUniversidade Tecnológica Federal do Paraná (UTFPR)Verified email at utfpr.edu.br
Romain A. GuyotInstitut de Recherche pour le DéveloppementVerified email at ird.fr
SILVIA GRACIELE HÜLSE DE SOUZAUniversidade ParanaenseVerified email at unipar.br
Gustavo César Sant' AnaMolecular plant breeder at Tropical Melhoramento e Genetica (TMG)Verified email at tmg.agr.br
Celso Luis MarinoInstituto de Biociências de Botucatu - Departamento de Ciências Químicas e BiológicasVerified email at unesp.br
Marcelo Falsarella CarazzollePesquisador de bioinformática, Univesidade Estadual de CampinasVerified email at lge.ibi.unicamp.br
Fernanda Freitas de OliveiraUniversidade Federal do ParanáVerified email at ufpr.br
Danilo Sipoli SanchesAssociate Professor of Computer Science, Federal University of Technology of Paraná (UTFPR)Verified email at utfpr.edu.br
Luciano FreschiProfessor or Plant Physiology and Biochemistry, University of Sao PauloVerified email at ib.usp.br
Andrea Akemi HoshinoPesquisadora colaboradora, Faculdade de Ciências Agronômicas, UNESPVerified email at lgf.ib.unicamp.br
Alessandra Ferreira RibasUniversidade Federal do ParanáVerified email at ufpr.br
Guilherme Marcello Queiroga CruzPhD student, Universidade de São PauloVerified email at usp.br
Robson Parmezan BonidiaUniversidade Tecnológica Federal do Paraná — UTFPRVerified email at utfpr.edu.br
André Carlos Ponce de Leon Ferreira...Artificial Intelligence Professor, University of São PauloVerified email at icmc.usp.br
Alan Pericles Rodrigues LorenzettiPostdoctoral Fellow, Lieber Institute for Brain DevelopmentVerified email at libd.org

Douglas Silva Domingues

Professor in Plant Molecular Genetics, University of São Paulo, ESALQ/USP

Verified email at usp.br - Homepage

Plant genomics transcriptomics Plant Metabolism gene family evolution TEs and ncRNAs


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RNA-Seq differential expression analysis: An extended review and a software tool J Costa-Silva, D Domingues, FM Lopes PloS one 12 (12), e0190152, 2017	720	2017
Physiological responses to drought, salinity, and heat stress in plants: a review TB Dos Santos, AF Ribas, SGH de Souza, IGF Budzinski, DS Domingues Stresses 2 (1), 113-135, 2022	307	2022
The accumulation of endogenous proline induces changes in gene expression of several antioxidant enzymes in leaves of transgenic Swingle citrumelo K de Carvalho, MKF de Campos, DS Domingues, LFP Pereira, LGE Vieira Molecular Biology Reports 40, 3269-3279, 2013	199	2013
Nitric oxide mediates the hormonal control of Crassulacean acid metabolism expression in young pineapple plants L Freschi, MA Rodrigues, DS Domingues, E Purgatto, MA Van Sluys, ... Plant physiology 152 (4), 1971-1985, 2010	105	2010
The biotechnology roadmap for sugarcane improvement CT Hotta, CG Lembke, DS Domingues, EA Ochoa, GMQ Cruz, ... Tropical Plant Biology 3, 75-87, 2010	98	2010
Stress-induced Δ1-pyrroline-5-carboxylate synthetase (P5CS) gene confers tolerance to salt stress in transgenic sugarcane JTS Guerzoni, NG Belintani, RMP Moreira, AA Hoshino, DS Domingues, ... Acta Physiologiae Plantarum 36, 2309-2319, 2014	82	2014
Analysis of plant LTR-retrotransposons at the fine-scale family level reveals individual molecular patterns DS Domingues, GMQ Cruz, CJ Metcalfe, FTS Nogueira, R Vicentini, ... BMC genomics 13, 1-14, 2012	76	2012
Genome-wide association study reveals candidate genes influencing lipids and diterpenes contents in Coffea arabica L GC Sant’Ana, LFP Pereira, D Pot, ST Ivamoto, DS Domingues, ... Scientific reports 8 (1), 465, 2018	74	2018
Pattern recognition analysis on long noncoding RNAs: a tool for prediction in plants TC Negri, WAL Alves, PH Bugatti, PTM Saito, DS Domingues, ... Briefings in bioinformatics 20 (2), 682-689, 2019	62	2019
MathFeature: feature extraction package for DNA, RNA and protein sequences based on mathematical descriptors RP Bonidia, DS Domingues, DS Sanches, AC de Carvalho Briefings in bioinformatics 23 (1), bbab434, 2022	59	2022
NCED expression is related to increased ABA biosynthesis and stomatal closure under aluminum stress MA Gavassi, GS Silva, CMS da Silva, AJ Thompson, K Macleod, ... Environmental and Experimental Botany 185, 104404, 2021	54	2021
Galactinol synthase transcriptional profile in two genotypes of Coffea canephora with contrasting tolerance to drought TBD Santos, RB Lima, GT Nagashima, CLO Petkowicz, ... Genetics and Molecular Biology 38, 182-190, 2015	52	2015
Nitrogen Starvation, Salt and Heat Stress in Coffee (Coffea arabica L.): Identification and Validation of New Genes for qPCR Normalization K de Carvalho, JC Bespalhok Filho, TB Dos Santos, SGH de Souza, ... Molecular biotechnology 53, 315-325, 2013	52	2013
A novel linkage map of sugarcane with evidence for clustering of retrotransposon-based markers AC Palhares, TB Rodrigues-Morais, MA Van Sluys, DS Domingues, ... Bmc Genetics 13, 1-16, 2012	52	2012
Transcriptome Analysis of Leaves, Flowers and Fruits Perisperm of Coffea arabica L. Reveals the Differential Expression of Genes Involved in Raffinose Biosynthesis ST Ivamoto, O Reis, DS Domingues, TB Dos Santos, FF De Oliveira, D Pot, ... PloS one 12 (1), e0169595, 2017	49	2017
PlanTE-MIR DB: a database for transposable element-related microRNAs in plant genomes AP R. Lorenzetti, GY A. de Antonio, AR Paschoal, DS Domingues Functional & integrative genomics 16, 235-242, 2016	45	2016
TERL: classification of transposable elements by convolutional neural networks MHP da Cruz, DS Domingues, PTM Saito, AR Paschoal, PH Bugatti Briefings in bioinformatics 22 (3), bbaa185, 2021	41	2021
Transcriptome analysis in Coffea eugenioides, an Arabica coffee ancestor, reveals differentially expressed genes in leaves and fruits PM Yuyama, O Reis Junior, ST Ivamoto, DS Domingues, MF Carazzolle, ... Molecular Genetics and Genomics 291, 323-336, 2016	41	2016
Feature extraction approaches for biological sequences: a comparative study of mathematical features RP Bonidia, LDH Sampaio, DS Domingues, AR Paschoal, FM Lopes, ... Briefings in Bioinformatics 22 (5), bbab011, 2021	40	2021
Homeologous genes involved in mannitol synthesis reveal unequal contributions in response to abiotic stress in Coffea arabica K de Carvalho, CLO Petkowicz, GT Nagashima, JC Bespalhok Filho, ... Molecular genetics and genomics 289, 951-963, 2014	36	2014

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