The cancer genome atlas pan-cancer analysis project JN Weinstein, EA Collisson, GB Mills, KR Shaw, BA Ozenberger, K Ellrott, ... Nature genetics 45 (10), 1113-1120, 2013 | 6890 | 2013 |
The molecular taxonomy of primary prostate cancer A Abeshouse, J Ahn, R Akbani, A Ally, S Amin, CD Andry, M Annala, ... Cell 163 (4), 1011-1025, 2015 | 2711 | 2015 |
Comprehensive molecular characterization of urothelial bladder carcinoma Cancer Genome Atlas Research Network Nature 507 (7492), 315, 2014 | 2710 | 2014 |
Pan-cancer analysis of whole genomes Nature 578 (7793), 82-93, 2020 | 1865* | 2020 |
The evolutionary history of 2,658 cancers M Gerstung, C Jolly, I Leshchiner, SC Dentro, S Gonzalez, D Rosebrock, ... Nature 578 (7793), 122-128, 2020 | 951 | 2020 |
The somatic genomic landscape of chromophobe renal cell carcinoma CF Davis, CJ Ricketts, M Wang, L Yang, AD Cherniack, H Shen, C Buhay, ... Cancer cell 26 (3), 319-330, 2014 | 838 | 2014 |
Comprehensive pan-genomic characterization of adrenocortical carcinoma S Zheng, AD Cherniack, N Dewal, RA Moffitt, L Danilova, BA Murray, ... Cancer cell 29 (5), 723-736, 2016 | 666 | 2016 |
Prediction of germline mutations and cancer risk in the Lynch syndrome S Chen, W Wang, S Lee, K Nafa, J Lee, K Romans, P Watson, SB Gruber, ... Jama 296 (12), 1479-1487, 2006 | 456 | 2006 |
Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes SC Dentro, I Leshchiner, K Haase, M Tarabichi, J Wintersinger, ... Cell 184 (8), 2239-2254. e39, 2021 | 339 | 2021 |
Combining tumor genome simulation with crowdsourcing to benchmark somatic single-nucleotide-variant detection AD Ewing, KE Houlahan, Y Hu, K Ellrott, C Caloian, TN Yamaguchi, ... Nature methods 12 (7), 623-630, 2015 | 331 | 2015 |
Proteogenomic characterization of pancreatic ductal adenocarcinoma L Cao, C Huang, DC Zhou, Y Hu, TM Lih, SR Savage, K Krug, DJ Clark, ... Cell 184 (19), 5031-5052. e26, 2021 | 324 | 2021 |
MuSE: accounting for tumor heterogeneity using a sample-specific error model improves sensitivity and specificity in mutation calling from sequencing data Y Fan, L Xi, DST Hughes, J Zhang, J Zhang, PA Futreal, DA Wheeler, ... Genome biology 17, 1-11, 2016 | 291 | 2016 |
PancPRO: risk assessment for individuals with a family history of pancreatic cancer W Wang, S Chen, KA Brune, RH Hruban, G Parmigiani, AP Klein Journal of clinical oncology 25 (11), 1417-1422, 2007 | 229 | 2007 |
Immuno-genomic landscape of osteosarcoma CC Wu, HC Beird, J Andrew Livingston, S Advani, A Mitra, S Cao, ... Nature communications 11 (1), 1008, 2020 | 190 | 2020 |
An ensemble approach to accurately detect somatic mutations using SomaticSeq LT Fang, PT Afshar, A Chhibber, M Mohiyuddin, Y Fan, JC Mu, G Gibeling, ... Genome biology 16, 1-13, 2015 | 126 | 2015 |
DeMix: deconvolution for mixed cancer transcriptomes using raw measured data J Ahn, Y Yuan, G Parmigiani, MB Suraokar, L Diao, II Wistuba, W Wang Bioinformatics 29 (15), 1865-1871, 2013 | 114 | 2013 |
BayesMendel: an R environment for Mendelian risk prediction S Chen, W Wang, KW Broman, HA Katki, G Parmigiani Statistical applications in genetics and molecular biology 3 (1), 2004 | 93 | 2004 |
Single-cell ATAC and RNA sequencing reveal pre-existing and persistent cells associated with prostate cancer relapse S Taavitsainen, N Engedal, S Cao, F Handle, A Erickson, S Prekovic, ... Nature communications 12 (1), 5307, 2021 | 80 | 2021 |
Neutral tumor evolution? M Tarabichi, I Martincorena, M Gerstung, AM Leroi, F Markowetz, ... Nature genetics 50 (12), 1630-1633, 2018 | 78 | 2018 |
Siah1 interacts with the scaffold protein POSH to promote JNK activation and apoptosis Z Xu, A Sproul, W Wang, N Kukekov, LA Greene Journal of Biological Chemistry 281 (1), 303-312, 2006 | 74 | 2006 |