| Assessment of network module identification across complex diseases S Choobdar, ME Ahsen, J Crawford, M Tomasoni, T Fang, D Lamparter, ... Nature methods 16 (9), 843-852, 2019 | 215 | 2019 |
| Kinetic modeling of cell metabolism for microbial production RS Costa, A Hartmann, S Vinga Journal of Biotechnology 219, 126-141, 2016 | 50 | 2016 |
| Identification of switched ARX models via convex optimization and expectation maximization A Hartmann, JM Lemos, RS Costa, J Xavier, S Vinga Journal of Process Control 28, 9-16, 2015 | 41 | 2015 |
| Real-time fractal signal processing in the time domain A Hartmann, P Mukli, Z Nagy, L Kocsis, P Hermán, A Eke Physica A: Statistical Mechanics and its Applications 392 (1), 89-102, 2013 | 27 | 2013 |
| Open community challenge reveals molecular network modules with key roles in diseases S Choobdar, ME Ahsen, J Crawford, M Tomasoni, T Fang, D Lamparter, ... bioRxiv, 265553, 2018 | 26 | 2018 |
| BacHBerry: BACterial Hosts for production of Bioactive phenolics from bERRY fruits A Dudnik, AF Almeida, R Andrade, B Avila, P Bañados, D Barbay, ... Phytochemistry reviews 17, 291-326, 2018 | 25 | 2018 |
| An extended dynamic model of Lactococcus lactis metabolism for mannitol and 2, 3-butanediol production RS Costa, A Hartmann, P Gaspar, AR Neves, S Vinga Molecular BioSystems 10 (3), 628-639, 2014 | 25 | 2014 |
| OptPipe-a pipeline for optimizing metabolic engineering targets A Hartmann, A Vila-Santa, N Kallscheuer, M Vogt, A Julien-Laferrière, ... BMC Systems Biology 11 (1), 1-9, 2017 | 16 | 2017 |
| Identifying IIR filter coefficients using particle swarm optimization with application to reconstruction of missing cardiovascular signals A Hartmann, JM Lemos, RS Costa, S Vinga Engineering Applications of Artificial Intelligence 34, 193-198, 2014 | 15 | 2014 |
| Reconstruction of missing cardiovascular signals using adaptive filtering A Hartmann 2010 Computing in Cardiology, 321-324, 2010 | 11 | 2010 |
| SigHotSpotter: scRNA-seq-based computational tool to control cell subpopulation phenotypes for cellular rejuvenation strategies S Ravichandran, A Hartmann, A Del Sol Bioinformatics 36 (6), 1963-1965, 2020 | 9 | 2020 |
| RefBool: a reference-based algorithm for discretizing gene expression data S Jung, A Hartmann, A Del Sol Bioinformatics 33 (13), 1953-1962, 2017 | 8 | 2017 |
| SeesawPred: a web application for predicting cell-fate determinants in cell differentiation A Hartmann, S Okawa, G Zaffaroni, A Del Sol Scientific reports 8 (1), 13355, 2018 | 6 | 2018 |
| Exploring the cellular objective in flux balance constraint-based models RS Costa, S Nguyen, A Hartmann, S Vinga Computational Methods in Systems Biology: 12th International Conference …, 2014 | 6 | 2014 |
| Two-tiered response of cardiorespiratory-cerebrovascular network to orthostatic challenge P Mukli, Z Nagy, FS Racz, I Portoro, A Hartmann, O Stylianou, ... Frontiers in Physiology 12, 216, 2021 | 5 | 2021 |
| Modeling multiple experiments using regularized optimization: A case study on bacterial glucose utilization dynamics A Hartmann, JM Lemos, S Vinga Computers in Biology and Medicine 63, 301-309, 2015 | 5 | 2015 |
| Online bayesian time-varying parameter estimation of hiv-1 time-series A Hartmann, S Vinga, JM Lemos IFAC Proceedings Volumes 45 (16), 1294-1299, 2012 | 5 | 2012 |
| Identification and automatic segmentation of multiphasic cell growth using a linear hybrid model A Hartmann, AR Neves, JM Lemos, S Vinga Mathematical Biosciences 279, 83-89, 2016 | 4 | 2016 |
| The gene regulation knowledge commons: the action area of GREEKC M Kuiper, J Bonello, JT Fernández-Breis, P Bucher, ME Futschik, ... Biochimica et Biophysica Acta (BBA)-Gene Regulatory Mechanisms 1865 (1), 194768, 2022 | 3 | 2022 |
| Modeling cellular differentiation and reprogramming with gene regulatory networks A Hartmann, S Ravichandran, A Del Sol Computational Stem Cell Biology: Methods and Protocols, 37-51, 2019 | 3 | 2019 |
Susana VingaINESC-ID, Instituto Superior Técnico, Universidade de LisboaDirección de correo verificada de tecnico.ulisboa.pt
